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Aleksic J, Lazic R, Mueller I, Russell SR, Adryan B (2009) Biases in Drosophila melanogaster protein trap screens. Bmc Genomics 10.

Aleksic J, Russell S (2009) ChIPing away at the genome: the new frontier travel guide. Molecular Biosystems 5.

Atherton HJ, Gulston MK, Bailey NJ, Cheng K-K, Zhang W, et al. (2009) Metabolomics of the interaction between PPAR-alpha and age in the PPAR-alpha-null mouse. Molecular Systems Biology 5.

Atzori L, Antonucci R, Barberini L, Griffin JL, Fanos V (2009) Metabolomics: a new tool for the neonatologist. Journal of Maternal-Fetal & Neonatal Medicine 22.

Baker DA, Russell S (2009) Gene expression during Drosophila melanogaster egg development before and after reproductive diapause. Bmc Genomics 10.

Bibb M, Hesketh A (2009) ANALYZING THE REGULATION OF ANTIBIOTIC PRODUCTION IN STREPTOMYCETES. In: Hopwood DA, editor. Complex Enzymes in Microbial Natural Product Biosynthesis, Part a: Overview Articles and Peptides.

Blagden SP, Gatt MK, Archambault V, Lada K, Ichihara K, et al. (2009) Drosophila Larp associates with poly(A)-binding protein and is required for male fertility and syncytial embryo development. Developmental Biology 334.


Calik P, Celik E, Oliver SG (2009) Recombinant protein production by Mut(+) strain of Pichia pastoris using dual carbon sources: methanol and sorbitol. New Biotechnology 25.

Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25.

Ccedilelik E, Ccedilalinodotk P, Oliver SG (2009) A structured kinetic model for recombinant protein production by Mut + strain of Pichia pastoris. Chemical Engineering Science 64.

Celik E, Calik P, Oliver SG (2009) A structured kinetic model for recombinant protein production by Mut(+) strain of Pichia pastoris. Chemical Engineering Science 64.

Celik E, Calik P, Oliver SG (2009) Fed-batch methanol feeding strategy for recombinant protein production by Pichia pastoris in the presence of co-substrate sorbitol. Yeast 26.

Celniker SE, Dillon LAL, Gerstein MB, Gunsalus KC, Henikoff S, et al. (2009) Unlocking the secrets of the genome. Nature 459.

Chu D, Zabet NR, Mitavskiy B (2009) Models of transcription factor binding: Sensitivity of activation functions to model assumptions. Journal of Theoretical Biology 257.

Deery MJ, Maywood ES, Chesham JE, Sladek M, Karp NA, et al. (2009) Proteomic Analysis Reveals the Role of Synaptic Vesicle Cycling in Sustaining the Suprachiasmatic Circadian Clock. Current Biology 19.

DePristo MA, Chang L, Vale RD, Khan SM, Lipkow K (2009) Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy. Progress in Biophysics & Molecular Biology 100.

Diaz H, Andrews BA, Hayes A, Castrillo J, Oliver SG, et al. (2009) Global gene expression in recombinant and non-recombinant yeast Saccharomyces cerevisiae in three different metabolic states. Biotechnology Advances 27.

Dickens AM, Anthony DC, Claridge TDW, Mardiguian S, Cavay A, et al. (2009) PLS models discriminate types of MS from spectroscopic analysis of plasma and urinele. Multiple Sclerosis 15.

Dobson PD, Lanthaler K, Oliver SG, Kell DB (2009) Implications of the Dominant Role of Transporters in Drug Uptake by Cells. Current Topics in Medicinal Chemistry 9.

Fineran PC, Blower TR, Foulds IJ, Humphreys DP, Lilley KS, et al. (2009) The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Proceedings of the National Academy of Sciences of the United States of America 106.

Fu AQ, Adryan B (2009) Scoring overlapping and adjacent signals from genome-wide ChIP and DamID assays. Molecular Biosystems 5.

Garrett M, Fullaondo A, Troxler L, Micklem G, Gubb D (2009) Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes. Bmc Genomics 10.

Gaudet P, Chisholm R, Berardini T, Dimmer E, Engel SR, et al. (2009) The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species. Plos Computational Biology 5.

Griffin JL, Des Rosiers C (2009) Applications of metabolomics and proteomics to the mdx mouse model of Duchenne muscular dystrophy: lessons from downstream of the transcriptome. Genome medicine 1.

Hall SL, Hester S, Griffin JL, Lilley KS, Jackson AP (2009) The Organelle Proteome of the DT40 Lymphocyte Cell Line. Molecular & Cellular Proteomics 8.

Hesketh A, Kock H, Mootien S, Bibb M (2009) The role of absC, a novel regulatory gene for secondary metabolism, in zinc-dependent antibiotic production in Streptomyces coelicolor A3(2). Molecular Microbiology 74.

Hodson MP, Dear GJ, Griffin JL, Haselden JN (2009) An approach for the development and selection of chromatographic methods for high-throughput metabolomic screening of urine by ultra pressure LC-ESI-ToF-MS. Metabolomics 5.

Hurd TR, James AM, Lilley KS, Murphy MR (2009) MEASURING REDOX CHANGES TO MITOCHONDRIAL PROTEIN THIOLS WITH REDOX DIFFERENCE GEL ELECTROPHORESIS (REDOX-DIGE). Methods in Enzymology, Vol 456: Mitochondrial Function, Part a: Mitochondrial Electron Transport Complexes and Reactive Oxygen Species 456.

Jameson D, Turner DA, Ankers J, Kennedy S, Ryan S, et al. (2009) Information management for high content live cell imaging. Bmc Bioinformatics 10.

Karp NA, Lilley KS (2009) Investigating sample pooling strategies for DIGE experiments to address biological variability. Proteomics 9.

Kasavi C, Finore I, Nicolaus B, Oner ET, Kirdar B, et al. (2009) Comparison of industrial Saccharomyces cerevisiae strains for second generation bioethanol production. New Biotechnology 25.

King RD, Rowland J, Aubrey W, Liakata M, Markham M, et al. (2009) THE ROBOT SCIENTIST ADAM. Computer 42.

King RD, Rowland J, Oliver SG, Young M, Aubrey W, et al. (2009) Make Way for Robot Scientists. Science 325.

King RD, Rowland J, Oliver SG, Young M, Aubrey W, et al. (2009) The Automation of Science. Science 324.

Kosebent D, Ates O, Oner ET, Oliver SG, Kirdar B (2009) Fermentation performances of amylolytic Saccharomyces cerevisiae integrands developed for bioethanol production. New Biotechnology 25.

Lan MJ, McLoughlin GA, Griffin JL, Tsang TM, Huang JTJ, et al. (2009) Metabonomic analysis identifies molecular changes associated with the pathophysiology and drug treatment of bipolar disorder. Molecular Psychiatry 14.

Lane LA, Ruotolo BT, Robinson CV, Favrin G, Benesch JLP (2009) A Monte Carlo approach for assessing the specificity of protein oligomers observed in nano-electrospray mass spectra. International Journal of Mass Spectrometry 283.

Martin S, Charoensawan V, Soellner C, Adryan B, Thisse B, et al. (2009) Regulation and evolution of an extracellular glycoprotein interaction network. Mechanisms of Development 126.

McCombie G, Browning LM, Titman CM, Song M, Shockcor J, et al. (2009) omega-3 oil intake during weight loss in obese women results in remodelling of plasma triglyceride and fatty acids. Metabolomics 5.

Mead JA, Bianco L, Ottone V, Barton C, Kay RG, et al. (2009) MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM) Transitions. Molecular & Cellular Proteomics 8.

Mikkelsen H, Bond NJ, Skindersoe ME, Givskov M, Lilley KS, et al. (2009) Biofilms and type III secretion are not mutually exclusive in Pseudomonas aeruginosa. Microbiology-Sgm 155.

Nanda S, DeFalco TJ, Loh SHY, Phochanukul N, Camara N, et al. (2009) Sox100B, a Drosophila Group E Sox-domain Gene, Is Required for Somatic Testis Differentiation. Sexual Development 3.

Nasrallah FA, Griffin JL, Balcar VJ, Rae C (2009) Understanding your inhibitions: effects of GABA and GABA(A) receptor modulation on brain cortical metabolism. Journal of Neurochemistry 108.

Pedreschi R, Hertog M, Robben J, Lilley KS, Karp NA, et al. (2009) Gel-Based Proteomics Approach to the Study of Metabolic Changes in Pear Tissue during Storage. Journal of Agricultural and Food Chemistry 57.

Postma L, Lehrach H, Ralser M (2009) Surviving in the cold: yeast mutants with extended hibernating lifespan are oxidant sensitive. Aging-Us 1.

Rae C, Nasrallah FA, Griffin JL, Balcar VJ (2009) Now I know my ABC. A systems neurochemistry and functional metabolomic approach to understanding the GABAergic system. Journal of Neurochemistry 109.

Ralser M, Lehrach H (2009) Building a new bridge between metabolism, free radicals and longevity. Aging-Us 1.

Ralser M, Wamelink MMC, Latkolik S, Jansen EEW, Lehrach H, et al. (2009) Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response. Nature Biotechnology 27.

Ralser M, Zeidler U, Lehrach H (2009) Interfering with Glycolysis Causes Sir2-Dependent Hyper-Recombination of Saccharomyces cerevisiae Plasmids. Plos One 4.

Reference Genome Group of the Gene Ontology C (2009) The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. PLoS computational biology 5.

Roberts LD, Hassall DG, Winegar DA, Haselden JN, Nicholls AW, et al. (2009) Increased hepatic oxidative metabolism distinguishes the action of Peroxisome proliferator-activated receptor delta from Peroxisome proliferator-activated receptor gamma in the ob/ob mouse. Genome medicine 1.

Roberts LD, Virtue S, Vidal-Puig A, Nicholls AW, Griffin JL (2009) Metabolic phenotyping of a model of adipocyte differentiation. Physiological Genomics 39.

Ryder E, Spriggs H, Drummond E, St Johnston D, Russell S (2009) The Flannotator-a gene and protein expression annotation tool for Drosophila melanogaster. Bioinformatics 25.

Schroeder MA, Atherton HJ, Ball DR, Cole MA, Heather LC, et al. (2009) Real-time assessment of Krebs cycle metabolism using hyperpolarized C-13 magnetic resonance spectroscopy. Faseb Journal 23.

Soldatova LN, Young M, Pir P, Aubrey W, King RD, et al. (2009) The robot scientist Adam. Computer 42.

Tan DJL, Dvinge H, Christoforou A, Bertone P, Arias AM, et al. (2009) Mapping Organelle Proteins and Protein Complexes in Drosophila melanogaster. Journal of Proteome Research 8.

Titman CM, Downs JA, Oliver SG, Carmichael PL, Scott AD, et al. (2009) A metabolomic and multivariate statistical process to assess the effects of genotoxins in Saccharomyces cerevisiae. Molecular Biosystems 5.

Wang DYQ, Cardelli L, Phillips A, Piterman N, Fisher J (2009) Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics. Bmc Systems Biology 3.

Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, et al. (2009) The 2008 update of the Aspergillus nidulans genome annotation: A community effort. Fungal Genetics and Biology 46.

Zhang N, Wu J, Oliver SG (2009) Gis1 is required for transcriptional reprogramming of carbon metabolism and the stress response during transition into stationary phase in yeast. Microbiology-Sgm 155.