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2014

Khabirova E, Moloney A, Marciniak SJ, Williams J, Lomas DA, Oliver SG, Favrin G, Sattelle DB, Crowther DC. (2014). The TRiC/CCT Chaperone Is Implicated in Alzheimer's Disease Based on Patient GWAS and an RNAi Screen in Aβ-Expressing Caenorhabditis elegans. PLoS One. 2014 Jul 31;9(7):e102985. doi: 10.1371/journal.pone.0102985. 

Christoforou A, Arias AM, Lilley KS (2014). Determining Protein Subcellular Localization in Mammalian Cell Culture with Biochemical Fractionation and iTRAQ 8-Plex Quantification. Methods Mol Biol. 2014;1156:157-74. doi: 10.1007/978-1-4939-0685-7_10. PMID:24791987[PubMed - in process] 

Walzer M, Pernas LE, .... Lilley KS, et al. (2014) qcML: an exchange format for quality control metrics from mass spectrometry experiments. Mol Cell Proteomics. 2014 Apr 23. [Epub ahead of print] PMID:24760958[PubMed - as supplied by publisher] Free Article

Elliott TS, Townsley FM, Bianco A, Ernst RJ, Sachdeva A, Elsässer SJ, Davis L, Lang K, Pisa R, Greiss S, Lilley KS, Chin JW (2014) Proteome labeling and protein identification in specific tissues and at specific developmental stages in an animal. Nat Biotechnol. 2014 Apr 13. doi: 10.1038/nbt.2860. [Epub ahead of print] PMID:24727715[PubMed - as supplied by publisher]

Li XW, Rees JS, Xue P, Zhang H, Hamaia SW, Sanderson B, Funk PE, Farndale RW, Lilley KS, Perrett S, Jackson AP (2014) New Insights into the DT40 B-Cell Receptor Cluster using a Proteomic Proximity Labeling Assay. J Biol Chem. 2014 Apr 4. [Epub ahead of print] PMID:24706754[PubMed - as supplied by publisher] Free Article

Hiemstra TF, Charles PD, Gracia T, Hester SS, Gatto L, Al-Lamki R, Floto RA, Su Y, Skepper JN, Lilley KS, Karet Frankl FE (2014) Human Urinary Exosomes as Innate Immune Effectors. J Am Soc Nephrol. 2014 Apr 3. [Epub ahead of print] PMID:24700864 [PubMed - as supplied by publisher]

Grüning, N. M., Du, D., Keller, M. A., Luisi, B. F., & Ralser, M. (2014). Inhibition of triosephosphate isomerase by phosphoenolpyruvate in the feedback-regulation of glycolysis.. Open Biol, 4(3), 130232. doi:10.1098/rsob.130232

Prigione, A., Rohwer, N., Hoffmann, S., Mlody, B., Drews, K., Bukowiecki, R.,Ralser M. . . . Adjaye, J. (2014). HIF1α modulates cell fate reprogramming through early glycolytic shift and upregulation of PDK1-3 and PKM2.. Stem Cells, 32(2), 364-376. doi:10.1002/stem.1552

Ezer, D., Zabet, N. R., & Adryan, B. (2014). Physical constraints determine the logic of bacterial promoter architectures.. Nucleic Acids Res. doi:10.1093/nar/gku078

Oliver, S. (2014). The harder we work ….. Yeast, 31(3), 81-82. doi:10.1002/yea.3000

Rutherford, K. M., Harris, M. A., Lock, A., Oliver, S. G., & Wood, V. (2014). Canto: an online tool for community literature curation.. Bioinformatics. doi:10.1093/bioinformatics/btu103

Wang, Y., Lilley, K. S., & Oliver, S. G. (2014). A protocol for the sub-cellular fractionation of Saccharomyces cerevisiae using nitrogen cavitation and density gradient centrifugation.. Yeast. doi:10.1002/yea.3002

Tzanis, A., Dalton, K. A., Hesketh, A., den Hengst, C. D., Buttner, M. J., Thibessard, A., . . . Kelemen, G. H. (2014). A sporulation-specific, sigF-dependent protein, SspA, affects septum positioning in Streptomyces coelicolor.. Mol Microbiol, 91(2), 363-380. doi:10.1111/mmi.12466

Xi, W., Schmidt, C. K., Sanchez, S., Gracias, D. H., Carazo-Salas, R. E., Jackson, S. P., . . . Schmidt, O. G. (2014). Rolled-up Functionalized Nanomembranes as Three-Dimensional Cavities for Single Cell Studies.. Nano Lett. doi:10.1021/nl4042565

Vaggi, F., Schiavinotto, T., Lawson, J. L., Chessel, A., Dodgson, J., Geymonat, M., Carazo-Salas, R. E.,. . . Csikász-Nagy, A. (2014). A network approach to mixing delegates at meetings.. Elife, 3, e02273. doi:10.7554/eLife.02273

Neville, M. C., Nojima, T., Ashley, E., Parker, D. J., Walker, J., Southall, T.,Russell, S. . . . Goodwin, S. F. (2014). Male-specific fruitless isoforms target neurodevelopmental genes to specify a sexually dimorphic nervous system.. Curr Biol, 24(3), 229-241. doi:10.1016/j.cub.2013.11.035

Roberts, L. D., West, J. A., Vidal-Puig, A., & Griffin, J. L. (2014). Methods for performing lipidomics in white adipose tissue.. Methods Enzymol, 538, 211-231. doi:10.1016/B978-0-12-800280-3.00012-8

Koulman, A., Prentice, P., Wong, M. C. Y., Matthews, L., Bond, N. J., Eiden, M., . . . Dunger, D. B. (2014). The development and validation of a fast and robust dried blood spot based lipid profiling method to study infant metabolism. Metabolomics, 1-8.

Jones, O. A. H., Sdepanian, S., Lofts, S., Svendsen, C., Spurgeon, D. J., Maguire, M. L., . . . Griffin, J. L. (2014). Metabolomic analysis of soil communities can be used for pollution assessment. Environmental Toxicology and Chemistry, 33(1), 61-64.

Roberts, L. D., Koulman, A., & Griffin, J. L. (2014). Towards metabolic biomarkers of insulin resistance and type 2 diabetes: Progress from the metabolome. The Lancet Diabetes and Endocrinology, 2(1), 65-75.

Füzesi-Levi, M. G., Ben-Nissan, G., Bianchi, E., Zhou, H., Deery, M. J., Lilley, K. S., . . . Sharon, M. (2014). Dynamic Regulation of the COP9 Signalosome in Response to DNA Damage.. Mol Cell Biol, 34(6), 1066-1076. doi:10.1128/MCB.01598-13

Feret, R., & Lilley, K. S. (2014). Protein Profiling Using Two-Dimensional Difference Gel Electrophoresis (2-D DIGE).. Curr Protoc Protein Sci, 75, 22.2.1-22.2.17. doi:10.1002/0471140864.ps2202s75

Gatto, L., Breckels, L. M., Wieczorek, S., Burger, T., & Lilley, K. S. (2014). Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata.. Bioinformatics. doi:10.1093/bioinformatics/btu013

Groen, A. J., Sancho-Andrés, G., Breckels, L. M., Gatto, L., Aniento, F., & Lilley, K. S. (2014). Identification of Trans-Golgi Network Proteins in Arabidopsis thaliana Root Tissue.. J Proteome Res. doi:10.1021/pr4008464

King, H. A., Cobbold, L. C., Pichon, X., Pöyry, T., Wilson, L. A., Booden, H., . . . Willis, A. E. (2014). Remodelling of a polypyrimidine tract-binding protein complex during apoptosis activates cellular IRESs. Cell Death and Differentiation, 21(1), 161-171.

Kalderimis, A., Stepan, R., Sullivan, J., Lyne, R., Lyne, M., & Micklem, G. (2014). BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs.. F1000Res, 3, 51. doi:10.12688/f1000research.3-51.v1

Gatto, L., & Christoforou, A. (2014). Using R and bioconductor for proteomics data analysis. Biochimica et Biophysica Acta - Proteins and Proteomics, 1844(1 PART A), 42-51.