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2013

Marygold, S. J., Leyland, P. C., Seal, R. L., Goodman, J. L., Thurmond, J., Strelets, V. B., Adryan, B . . . FlyBase consortium. (2013). FlyBase: improvements to the bibliography.. Nucleic Acids Res, 41(Database issue), D751-D757. doi:10.1093/nar/gks1024

Zabet, N. R., & Adryan, B. (2013). The effects of transcription factor competition on gene regulation. Frontiers in Genetics 4:197 (2013). doi:10.3389/fgene.2013.00197

Zabet, N. R., Foy, R., & Adryan, B. (2013). The influence of transcription factor competition on the relationship  between occupancy and affinity. PLoS ONE 8:, 9, e73714. doi:10.1371/journal.pone.0073714

Schep, A., & Adryan, B. (2013). A comparative analysis of transcription factor expression during   metazoan embryonic development. Retrieved from http://arxiv.org/abs/1301.1565v1

Jin, H., Stojnic, R., Adryan, B., Ozdemir, A., Stathopoulos, A., & Frasch, M. (2013). Genome-wide screens for in vivo Tinman binding sites identify cardiac enhancers with diverse functional architectures.. PLoS Genet, 9(1), e1003195. doi:10.1371/journal.pgen.1003195

Koutsimpelas, D., Bjelopavlovic, M., Yetis, R., Frauenknecht, K., Adryan, B., Schmidtmann,       I., Gouveris, H., Fruth, K., Heinrich, U., Stauber, R., Mann, W., Brieger, J. (2013)    The      VEGF/VEGF-R Axis in Sporadic Vestibular Schwannomas Correlates with      Irradiation       and Disease Recurrence., ORL J Otorhinolaryngol Relat Spec. 2013,     74(6):330-338.

Alcasabas, A. A., De Clare, M., Pir, P., & Oliver, S. G. (2013). Control analysis of the eukaryotic cell cycle using gene copy-number series in yeast tetraploids. BMC Genomics, 14(1).

Dikicioglu, D., Oc, S., Rash, B. M., Dunn, W. B., Pir, P., Kell, D. B., . . . Oliver, S. G. (2014). Yeast cells with impaired drug resistance accumulate glycerol and glucose.. Mol Biosyst, 10(1), 93-102. doi:10.1039/c2mb25512j

Dikicioglu, D., Pir, P., & Oliver, S. G. (2013). Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory. Biotechnology Journal, 8(9), 1017-1034.

Castrillo, J. I., Pir, P., & Oliver, S. G. (2013). Yeast Systems Biology: Towards a Systems Understanding of Regulation of Eukaryotic Networks in Complex Diseases and Biotechnology. Handbook of Systems Biology, 343-365.

Smallbone, K., Messiha, H. L., Carroll, K. M., Winder, C. L., Malys, N., Dunn, W. B., . . . Mendes, P. (2013). A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes. FEBS Letters, 587(17), 2832-2841.

Smallbone, K., Messiha, H. L., Carroll, K. M., Winder, C. L., Malys, N., Dunn, W. B., . . . Mendes, P. (2013). A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.. FEBS Lett, 587(17), 2832-2841. doi:10.1016/j.febslet.2013.06.043

Zhang, N., Quan, Z., Rash, B., & Oliver, S. G. (2013). Synergistic effects of TOR and proteasome pathways on the yeast transcriptome and cell growth.. Open Biol, 3(5), 120137. doi:10.1098/rsob.120137

de Clare, M., & Oliver, S. G. (2013). Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae.. BMC Biol, 11, 24. doi:10.1186/1741-7007-11-24

Bilsland, E., Sparkes, A., Williams, K., Moss, H. J., de Clare, M., Pir, P., . . . Oliver, S. G. (2013). Yeast-based automated high-throughput screens to identify anti-parasitic lead compounds.. Open Biol, 3(2), 120158. doi:10.1098/rsob.120158

Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Ni, L., Sitnikov, D., . . . Consortium, G. O. (2013). Gene Ontology Annotations and Resources. NUCLEIC ACIDS RESEARCH, 41(D1), D530-D535. doi:10.1093/nar/gks1050

Kell, D. B., Dobson, P. D., Bilsland, E., & Oliver, S. G. (2013). The promiscuous binding of pharmaceutical drugs and their transporter-mediated uptake into cells: what we (need to) know and how we can do so.. Drug Discov Today, 18(5-6), 218-239. doi:10.1016/j.drudis.2012.11.008

Hesketh, A. R., Castrillo, J. I., Sawyer, T., Archer, D. B., & Oliver, S. G. (2013). Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures. Applied Microbiology and Biotechnology, 97(22), 9747-9762.

Uguru, G. C., Mondhe, M., Goh, S., Hesketh, A., Bibb, M. J., Good, L., . . . Stach, J. E. (2013). Synthetic RNA Silencing of Actinorhodin Biosynthesis in Streptomyces coelicolor A3(2).. PLoS One, 8(6), e67509. doi:10.1371/journal.pone.0067509

Kwun, M. J., Novotna, G., Hesketh, A. R., Hill, L., & Hong, H. J. (2013). In vivo studies suggest that induction of VanS-dependent vancomycin resistance requires binding of the drug to D-Ala-D-Ala termini in the peptidoglycan cell wall.. Antimicrob Agents Chemother, 57(9), 4470-4480. doi:10.1128/AAC.00523-13

Sherwood, E., Hesketh, A. R., & Bibb, M. J. (n.d.) Cloning and analysis of the planosporicin lantibiotic biosynthetic gene cluster of Planomonospora alba.. J. Bacteriol.

Hayles, J., Wood, V., Jeffery, L., Hoe, K. L., Kim, D. U., Park, H. O., . . . Nurse, P. (2013). A genome-wide resource of cell cycle and cell shape genes of fission yeast.. Open Biol, 3(5), 130053. doi:10.1098/rsob.130053

Gene Ontology Consortium., Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Li, N., Harris MA, Oliver SG, Rutherford K, Wood V,. . . Westerfield, M. (2013). Gene Ontology annotations and resources.. Nucleic Acids Res, 41(Database issue), D530-D535. doi:10.1093/nar/gks1050

Harris, M. A., Lock, A., Bähler, J., Oliver, S. G., & Wood, V. (2013). FYPO: the fission yeast phenotype ontology.. Bioinformatics, 29(13), 1671-1678. doi:10.1093/bioinformatics/btt266

Lawson, J. L., & Carazo Salas, R. E. (2013). Microtubules: greater than the sum of the parts.. Biochem Soc Trans, 41(6), 1736-1744. doi:10.1042/BST20130239

Csikász-Nagy, A., Sato, M., & Carazo Salas, R. E. (2013). Projecting cell polarity into the next decade.. Philos Trans R Soc Lond B Biol Sci, 368(1629), 20130001. doi:10.1098/rstb.2013.0001

Bajpai, A., Feoktistova, A., Chen, J. S., McCollum, D., Sato, M., Carazo-Salas, R. E., . . . Csikász-Nagy, A. (2013). Dynamics of SIN asymmetry establishment.. PLoS Comput Biol, 9(7), e1003147. doi:10.1371/journal.pcbi.1003147

Dodgson, J., Chessel, A., Yamamoto, M., Vaggi, F., Cox, S., Rosten, E., . . . Carazo-Salas, R. E. (2013). Spatial segregation of polarity factors into distinct cortical clusters is required for cell polarity control.. Nat Commun, 4, 1834. doi:10.1038/ncomms2813

Aleksic, J., Ferrero, E., Fischer, B., Shen, S. P., & Russell, S. (2013). The role of Dichaete in transcriptional regulation during Drosophila embryonic development. BMC GENOMICS, 14. doi:10.1186/1471-2164-14-861

Fu, A. Q., Russell, S., Bray, S. J., & Tavare, S. (2013). Bayesian clustering of replicated time-course gene expression data with weak signals. ANNALS OF APPLIED STATISTICS, 7(3), 1334-1361. doi:10.1214/13-AOAS650

Chan, Y. -S., Takeuchi, R., Jarjour, J., Huen, D. S., Stoddard, B. L., & Russell, S. (2013). The Design and In Vivo Evaluation of Engineered I-OnuI-Based Enzymes for HEG Gene Drive. PLOS ONE, 8(9). doi:10.1371/journal.pone.0074254

Chan, Y. -S., Huen, D. S., Glauert, R., Whiteway, E., & Russell, S. (2013). Optimising Homing Endonuclease Gene Drive Performance in a Semi-Refractory Species: The Drosophila melanogaster Experience. PLOS ONE, 8(1). doi:10.1371/journal.pone.0054130

Housden, B. E., Fu, A. Q., Krejci, A., Bernard, F., Fischer, B., Tavaré, S., . . . Bray, S. J. (2013). Transcriptional dynamics elicited by a short pulse of notch activation involves feed-forward regulation by E(spl)/Hes genes.. PLoS Genet, 9(1), e1003162. doi:10.1371/journal.pgen.1003162

Shen, S. P., Aleksic, J., & Russell, S. (2013). Identifying targets of the Sox domain protein Dichaete in the Drosophila CNS via targeted expression of dominant negative proteins.. BMC Dev Biol, 13, 1. doi:10.1186/1471-213X-13-1

Favrin, G., Bean, D. M., Bilsland, E., Boyer, H., Fischer, B. E., Russell, S., . . . Giannakou, M. E. (2013). Identification of novel modifiers of Aβ toxicity by transcriptomic analysis in the fruitfly.. Sci Rep, 3, 3512. doi:10.1038/srep03512

Ilsley, G. R., Fisher, J., Apweiler, R., DePace, A. H., & Luscombe, N. M. (2013). Cellular resolution models for even skipped regulation in the entire Drosophila embryo. eLife, 2013(2).

Köksal, A. S., Pu, Y., Srivastava, S., Bodík, R., Fisher, J., & Piterman, N. (2013). Synthesis of biological models from mutation experiments. ACM SIGPLAN Notices, 48(1), 469-482.

Taylor, A. S., Piterman, N., Ishtiaq, S., Fisher, J., Cook, B., Cockerton, C., . . . Benque, D. (2013). At the interface of biology and computation. Conference on Human Factors in Computing Systems - Proceedings, 493-502.

Claessen, K., Fisher, J., Ishtiaq, S., Piterman, N., & Wang, Q. (2013). Model-checking signal transduction networks through decreasing reachability sets. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8044 LNCS, 85-100.

Moignard, V., Woodhouse, S., Fisher, J., & Göttgens, B. (2013). Transcriptional hierarchies regulating early blood cell development.. Blood Cells Mol Dis, 51(4), 239-247. doi:10.1016/j.bcmd.2013.07.007

Koeksal, A. S., Pu, Y., Srivastava, S., Bodik, R., Fisher, J., & Piterman, N. (2013). Synthesis of Biological Models from Mutation Experiments. ACM SIGPLAN NOTICES, 48(1), 469-482. doi:10.1145/2480359.2429125

Snoek, L. B., Van der Velde, K. J., Arends, D., Li, Y., Beyer, A., Elvin, M., . . . Swertz, M. A. (2013). WormQTL-public archive and analysis web portal for natural variation data in Caenorhabditis spp. NUCLEIC ACIDS RESEARCH, 41(D1), D738-D743. doi:10.1093/nar/gks1124

Peden, A. S., Mac, P., Fei, Y. -J., Castro, C., Jiang, G., Murfitt, K. J., . . . Jorgensen, E. M. (2013). Betaine acts on a ligand-gated ion channel in the nervous system of the nematode C. elegans. Nature Neuroscience, 16(12), 1794-1801.

Jones, O. A., Sdepanian, S., Lofts, S., Svendsen, C., Spurgeon, D. J., Maguire, M. L., . . . Griffin, J. L. (2013). Metabolomic analysis of soil communities can be used for pollution assessment. Environmental Toxicology and Chemistry.

Roberts, L. D., Koulman, A., & Griffin, J. L. (2013). Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome. The Lancet Diabetes and Endocrinology.

Heather, L. C., Pates, K. M., Atherton, H. J., Cole, M. A., Ball, D. R., Evans, R. D., . . . Clarke, K. (2013). Differential translocation of the fatty acid transporter, FAT/CD36, and the glucose transporter, GLUT4, coordinates changes in cardiac substrate metabolism during ischemia and reperfusion. Circulation: Heart Failure, 6(5), 1058-1066.

Peden, A. S., Mac, P., Fei, Y. J., Castro, C., Jiang, G., Murfitt, K. J., . . . Jorgensen, E. M. (2013). Betaine acts on a ligand-gated ion channel in the nervous system of the nematode C. elegans.. Nat Neurosci, 16(12), 1794-1801. doi:10.1038/nn.3575

Ament, Z., Waterman, C. L., West, J. A., Waterfield, C., Currie, R. A., Wright, J., . . . Griffin, J. L. (2013). A metabolomics investigation of non-genotoxic carcinogenicity in the rat.. J Proteome Res, 12(12), 5775-5790. doi:10.1021/pr4007766

Budczies, J., Brockmöller, S. F., Müller, B. M., Barupal, D. K., Richter-Ehrenstein, C., Kleine-Tebbe, A., . . . Fiehn, O. (2013). Comparative metabolomics of estrogen receptor positive and estrogen receptor negative breast cancer: Alterations in glutamine and beta-alanine metabolism. Journal of Proteomics, 94, 279-288.

Jamers, A., Blust, R., De Coen, W., Griffin, J. L., & Jones, O. A. H. (2013). Copper toxicity in the microalga Chlamydomonas reinhardtii: An integrated approach. BioMetals, 26(5), 731-740.

Breckenridge, R. A., Piotrowska, I., Ng, K. -E., Ragan, T. J., West, J. A., Kotecha, S., . . . Mohun, T. J. (2013). Hypoxic Regulation of Hand1 Controls the Fetal-Neonatal Switch in Cardiac Metabolism. PLoS Biology, 11(9).

Emwas, A. -H. M., Salek, R. M., Griffin, J. L., & Merzaban, J. (2013). NMR-based metabolomics in human disease diagnosis: Applications, limitations, and recommendations. Metabolomics, 9(5), 1048-1072.

Griffin, J. L., & Salek, R. M. (2010). 1 H MAS NMR Spectroscopy of Tissues. Encyclopedia of Spectroscopy and Spectrometry, 925-930.

Jones, O. A. H., Maguire, M. L., Griffin, J. L., Dias, D. A., Spurgeon, D. J., & Svendsen, C. (2013). Metabolomics and its use in ecology. Austral Ecology, 38(6), 713-720.

Carobbio, S., Hagen, R. M., Lelliott, C. J., Slawik, M., Medina-Gomez, G., Tan, C. Y., . . . Vidal-Puig, A. (2013). Adaptive changes of the Insig1/SREBP1/SCD1 set point help adipose tissue to cope with increased storage demands of obesity.. Diabetes, 62(11), 3697-3708. doi:10.2337/db12-1748

Ubhi, B. K., Davenport, P. W., Welch, M., Riley, J., Griffin, J. L., & Connor, S. C. (2013). Analysis of chloroformate-derivatised amino acids, dipeptides and polyamines by LC-MS/MS.. J Chromatogr B Analyt Technol Biomed Life Sci, 934, 79-88. doi:10.1016/j.jchromb.2013.06.026

Jones, O. A. H., Murfitt, S., Svendsen, C., Turk, A., Turk, H., Spurgeon, D. J., . . . Griffin, J. L. (2013). Comparisons of metabolic and physiological changes in rats following short term oral dosing with pesticides commonly found in food. Food and Chemical Toxicology, 59, 438-445.

Jamers, A., Blust, R., De Coen, W., Griffin, J. L., & Jones, O. A. H. (2013). Copper toxicity in the microalga Chlamydomonas reinhardtii: an integrated approach. BioMetals, 1-10.

Catalán, Ú., Rodríguez, M. -A., Ras, M. -R., MacIá, A., Mallol, R., Vinaixa, M., . . . Solà, R. (2013). Biomarkers of food intake and metabolite differences between plasma and red blood cell matrices; A human metabolomic profile approach. Molecular BioSystems, 9(6), 1411-1422.

Pan, X., Wilson, M., McConville, C., Arvanitis, T. N., Griffin, J. L., Kauppinen, R. A., . . . Peet, A. C. (2013). Increased unsaturation of lipids in cytoplasmic lipid droplets in DAOY cancer cells in response to cisplatin treatment. Metabolomics, 9(3), 722-729.

Emwas, A. -H. M., Salek, R. M., Griffin, J. L., & Merzaban, J. (2013). NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations. Metabolomics, 1-25.

Castro, C., Krumsiek, J., Lehrbach, N. J., Murfitt, S. A., Miska, E. A., & Griffin, J. L. (2013). A study of Caenorhabditis elegans DAF-2 mutants by metabolomics and differential correlation networks.. Mol Biosyst, 9(7), 1632-1642. doi:10.1039/c3mb25539e

Heather, L. C., Wang, X., West, J. A., & Griffin, J. L. (2013). A practical guide to metabolomic profiling as a discovery tool for human heart disease. Journal of Molecular and Cellular Cardiology, 55(1), 2-11.

Heather, L. C., Wang, X., West, J. A., & Griffin, J. L. (2013). A practical guide to metabolomic profiling as a discovery tool for human heart disease. Journal of Molecular and Cellular Cardiology.

Jones, O. A. H., Maguire, M. L., Griffin, J. L., Dias, D. A., Spurgeon, D. J., & Svendsen, C. (2013). Metabolomics and its use in ecology. Austral Ecology.

Jamers, A., Blust, R., De Coen, W., Griffin, J. L., & Jones, O. A. H. (2013). An omics based assessment of cadmium toxicity in the green alga Chlamydomonas reinhardtii. Aquatic Toxicology, 126, 355-364.

Haug, K., Salek, R. M., Conesa, P., Hastings, J., de Matos, P., Rijnbeek, M., . . . Steinbeck, C. (2013). MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.. Nucleic Acids Res, 41(Database issue), D781-D786. doi:10.1093/nar/gks1004

Wilf, N. M., Reid, A. J., Ramsay, J. P., Williamson, N. R., Croucher, N. J., Gatto, L., . . . Salmond, G. P. (2013). RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.. BMC Genomics, 14, 822. doi:10.1186/1471-2164-14-822

King, H. A., Cobbold, L. C., Pichon, X., Pöyry, T., Wilson, L. A., Booden, H., . . . Willis, A. E. (2013). Remodelling of a polypyrimidine tract-binding protein complex during apoptosis activates cellular IRESs. Cell Death and Differentiation.

Koutroukides, T. A., Jaros, J. A., Amess, B., Martins-de-Souza, D., Guest, P. C., Rahmoune, H., . . . Lilley, K. S. (2013). Identification of protein biomarkers in human serum using iTRAQ and shotgun mass spectrometry.. Methods Mol Biol, 1061, 291-307. doi:10.1007/978-1-62703-589-7_18

Armean, I. M., Lilley, K. S., & Trotter, M. W. (2013). Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments.. Mol Cell Proteomics, 12(1), 1-13. doi:10.1074/mcp.R112.019554

Chouchani, E. T., Methner, C., Nadtochiy, S. M., Logan, A., Pell, V. R., Ding, S., . . . Murphy, M. P. (2013). Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex i. Nature Medicine, 19(6), 753-759.

Chouchani, E. T., Methner, C., Nadtochiy, S. M., Logan, A., Pell, V. R., Ding, S., . . . Murphy, M. P. (2013). Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I.. Nat Med, 19(6), 753-759. doi:10.1038/nm.3212

Shliaha, P. V., Bond, N. J., Gatto, L., & Lilley, K. S. (2013). Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies.. J Proteome Res, 12(6), 2323-2339. doi:10.1021/pr300775k

Bond, N. J., Shliaha, P. V., Lilley, K. S., & Gatto, L. (2013). Improving qualitative and quantitative performance for MS(E)-based label-free proteomics.. J Proteome Res, 12(6), 2340-2353. doi:10.1021/pr300776t

Ivanov, A. R., Colangelo, C. M., Dufresne, C. P., Friedman, D. B., Lilley, K. S., Mechtler, K., . . . Weintraub, S. T. (2013). Interlaboratory studies and initiatives developing standards for proteomics. Proteomics, 13(6), 904-909.

Breckels, L. M., Gatto, L., Christoforou, A., Groen, A. J., Lilley, K. S., & Trotter, M. W. (2013). The effect of organelle discovery upon sub-cellular protein localisation.. J Proteomics, 88, 129-140. doi:10.1016/j.jprot.2013.02.019

Marondedze, C., Turek, I., Parrott, B., Thomas, L., Jankovic, B., Lilley, K. S., . . . Gehring, C. (2013). Structural and functional characteristics of cGMP-dependent methionine oxidation in Arabidopsis thaliana proteins. Cell Communication and Signaling, 11(1).

Marondedze C, Lilley K, Thomas L. (2013) Comparative gel-based phosphoproteomics in response to signaling molecules. Methods Mol Biol. 2013;1016:139-54. doi: 10.1007/978-1-62703-441-8_10.

Hemsley, P. A., Weimar, T., Lilley, K. S., Dupree, P., & Grierson, C. S. (2013). A proteomic approach identifies many novel palmitoylated proteins in Arabidopsis. New Phytologist, 197(3), 805-814.

Claeys Bouuaert, C., Lipkow, K., Andrews, S. S., Liu, D., & Chalmers, R. (2013). The autoregulation of a eukaryotic DNA transposon.. Elife, 2, e00668. doi:10.7554/eLife.00668

Sewitz, S. and Lipkow, K. (2013) Simulating bacterial chemotaxis at high spatio-temporal detail. Current Chemical Biology, in press.  Special issue: Computational Cell Biology.

Sullivan, J., Karra, K., Moxon, S. A. T., Vallejos, A., Motenko, H., Wong, J. D., . . . Micklem, G. (2013). Erratum: InterMOD: Integrated data and tools for the unification of model organism research (Scientific Reports (2013) 3 (1802) DOI: 10.1038/srep01802). Scientific Reports, 3.

Sullivan, J., Karra, K., Moxon, S. A., Vallejos, A., Motenko, H., Wong, J. D., . . . Micklem, G. (2013). CORRIGENDUM: InterMOD: integrated data and tools for the unification of model organism research.. Sci Rep, 3, 3303. doi:10.1038/srep03303

Baumgarten, S., Bayer, T., Aranda, M., Liew, Y. J., Carr, A., Micklem, G., . . . Voolstra, C. R. (2013). Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.. BMC Genomics, 14, 704. doi:10.1186/1471-2164-14-704

Diffner, E., Beck, D., Gudgin, E., Thoms, J. A. I., Knezevic, K., Pridans, C., . . . Pimanda, J. E. (2013). Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia. BLOOD, 121(12), 2289-2300. doi:10.1182/blood-2012-07-446120

Lyne, M., Smith, R. N., Lyne, R., Aleksic, J., Hu, F., Kalderimis, A., . . . Micklem, G. (2013). metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.. Database (Oxford), 2013, bat060. doi:10.1093/database/bat060

Sullivan, J., Karra, K., Moxon, S. A., Vallejos, A., Motenko, H., Wong, J. D., . . . Micklem, G. (2013). InterMOD: integrated data and tools for the unification of model organism research.. Sci Rep, 3, 1802. doi:10.1038/srep01802

Katayama, T., Wilkinson, M. D., Micklem, G., Kawashima, S., Yamaguchi, A., Nakao, M., . . . Takagi, T. (2013). The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.. J Biomed Semantics, 4(1), 6. doi:10.1186/2041-1480-4-6

Diffner, E., Beck, D., Gudgin, E., Thoms, J. A., Knezevic, K., Pridans, C., . . . Pimanda, J. E. (2013). Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia.. Blood, 121(12), 2289-2300. doi:10.1182/blood-2012-07-446120

Breitenbach, M., Rinnerthaler, M., Hartl, J., Stincone, A., Vowinckel, J., Breitenbach-Koller, H., . . . Ralser, M. (2013). Mitochondria in ageing: there is metabolism beyond the ROS.. FEMS Yeast Res. doi:10.1111/1567-1364.12134

Krüger, A., Vowinckel, J., Mülleder, M., Grote, P., Capuano, F., Bluemlein, K., . . . Ralser, M. (2013). Tpo1-mediated spermine and spermidine export controls cell cycle delay and times antioxidant protein expression during the oxidative stress response.. EMBO Rep, 14(12), 1113-1119. doi:10.1038/embor.2013.165

Sarper, N., Zengin, E., Jakobs, C., Salomons, G. S., Wamelink, M. M. C., Ralser, M., . . . Kara, B. (2013). Mild hemolytic anemia, progressive neuromotor retardation and fatal outcome: A disorder of glycolysis, triose-phosphate isomerase deficiency. Turkish Journal of Pediatrics, 55(2), 198-202.

Breitenbach, M., Ralser, M., Perrone, G. G., Iglseder, B., Rinnerthaler, M., & Dawes, I. W. (2013). Oxidative stress and neurodegeneration: the yeast model system.. Front Biosci (Landmark Ed), 18, 1174-1193. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/23747875

Prevosto, C., Usmani, F., McDonald, S., Lipinska, A. M., Key, T., Goodman, R. A., . . . Busch, R. (2013). Allele-independent protein turnover enables codominant expression of HLA class Ia alleles in human APCs. In IMMUNOLOGY Vol. 140 (pp. 40).

De Riva, A., Varley, M. C., Bluck, L. J., Cooke, A., Deery, M. J., & Busch, R. (2013). Accelerated turnover of MHC class II molecules in NOD mice is developmentally and environmentally regulated in vivo and dispensable for autoimmunity. In IMMUNOLOGY Vol. 140 (pp. 49).

De Riva, A., Varley, M. C., Bluck, L. J., Cooke, A., Deery, M. J., & Busch, R. (2013). Accelerated turnover of MHC class II molecules in nonobese diabetic mice is developmentally and environmentally regulated in vivo and dispensable for autoimmunity.. J Immunol, 190(12), 5961-5971. doi:10.4049/jimmunol.1300551